PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.B01964.1.p
Common NameEUGRSUZ_B01964, LOC104432321
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family MYB
Protein Properties Length: 199aa    MW: 23175.2 Da    PI: 10.3862
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.B01964.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding64.91.5e-201764148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      rg+WT+eEd++l+++++ +G+++Wk++a++ g++R++k+c++rw++yl
  Eucgr.B01964.1.p 17 RGAWTPEEDQKLARVIETHGPRRWKLVAAKAGLNRCGKSCRLRWLNYL 64
                      89********************************************97 PP

2Myb_DNA-binding506.7e-1670115148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                       rg+ + +E++l+++++++lG++ W++Ia +++ gRt++++k++w+++l
  Eucgr.B01964.1.p  70 RGNISDQEEDLILRLHRLLGNR-WSLIAGRLP-GRTDNEIKNYWNSHL 115
                       78999*****************.*********.************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129425.8941268IPR017930Myb domain
SuperFamilySSF466892.42E-2916111IPR009057Homeodomain-like
SMARTSM007175.5E-171666IPR001005SANT/Myb domain
PfamPF002495.7E-201764IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.8E-261871IPR009057Homeodomain-like
CDDcd001677.53E-121964No hitNo description
PROSITE profilePS5129420.89669119IPR017930Myb domain
SMARTSM007173.1E-1569117IPR001005SANT/Myb domain
PfamPF002491.9E-1470115IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.6E-2572120IPR009057Homeodomain-like
CDDcd001677.27E-1074115No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    Send to blast
MPMAPTRSRY SKREANRGAW TPEEDQKLAR VIETHGPRRW KLVAAKAGLN RCGKSCRLRW  60
LNYLRPNIKR GNISDQEEDL ILRLHRLLGN RWSLIAGRLP GRTDNEIKNY WNSHLSKKIK  120
QKENQSKSPE QDQSQDLRNS AARMHSMAGN NGETSKRDEV MKTDFSRNEI LDSFDEGPLN  180
LEWMSRFLEM DESWFSFA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A7e-30141191105MYB PROTO-ONCOGENE PROTEIN
1h88_C3e-29141219159MYB PROTO-ONCOGENE PROTEIN
1h89_C3e-29141219159MYB PROTO-ONCOGENE PROTEIN
1mse_C9e-30171194105C-Myb DNA-Binding Domain
1msf_C9e-30171194105C-Myb DNA-Binding Domain
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.B01964.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010043080.11e-146PREDICTED: transcription factor MYB114-like
SwissprotP102901e-51MYBC_MAIZE; Anthocyanin regulatory C1 protein
SwissprotQ9SEI03e-52WER_ARATH; Transcription factor WER
TrEMBLA0A059D3X31e-146A0A059D3X3_EUCGR; Uncharacterized protein
STRINGVIT_04s0008g01870.t012e-92(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14750.12e-53myb domain protein 66